Controller program doesn't work in flash F28035.

Hello everybody,
 
 
The three phase PFC controller program was developed in CCS 3.3 using control card F28035 RAM, now I want to flash it, the following changes I made to run it from flash.
 
Option – customize – debug properties – perform go main automatic – disable.
-         connect to the target at the start – disable.
-         program/project/CIO – load program after build – disable.
 
Selected F2803X_FLASH as option to run program.
 
After rebuilt all, following procedure is used to flash it.
 
 
 
TOOL – F28XX on-chip flash programmer – operation load [XX.out] file,
 
And then click on erase.program.verify – then click on RUN,
 
This above said procedure works with out any error, a code included in the ISR to toggle the port-34 works fine, but the instruction written using IQ maths library doesn’t work, as it works in RAM.
 
What changes are required to successful run from flash?
 
Thanks in advance.
 
 
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